We work at the Cutting Edge
of Genomic Technologies

Free and easy-to-use mobile data-gathering platform

  • Drag and drop form builder for questionnaires.
  • Photos, videos, audio and barcodes can be added.
  • Geotag data as they are collected.
  • Downloadable and editable for ease of data collection and privacy.
Visit Epicollect

Open data visualisation and sharing for genomic epidemiology

  • Definable and editable metadata fields for to display on visualisations.
  • Pin-point time specific events using the time time-slider.
  • Endorsed by CDC, ECDC and PHE for routine investigation of public health incidents
  • Visualise and explore trees linked to geographic locations.
Visit Microreact

A global platform for genomic surveillance

  • Fast predictions of resistant genotypes and clustering.
  • Real-time analytics and genomic epidemiology.
  • Facilitates processing, clustering and exploration of whole genome assemblies.
  • Easily integrates with Epicollect.
Visit Pathogen.watch

Open-source, modular, and extensible data integration

  • Effortless integration through data transformation pipelines.
  • Friction-free data sharing.
  • Compose pipelines within the user interface.
  • Funded and used by CDC.
Visit Data-flo

Our Research Alliances and Funders


Centers for Disease
Control and Prevention


European Centre for Disease Prevention and Control


Food and Agriculture Organisation
of the United Nations


National Institutes
for Health


National Institute for
Health Research


World Health Organisation

Big Data Institute logoOxford University logoWellcome Trust logo
Wellcome Sanger Institute logoWellcome Genome Campus logo

Ⓒ 2019 Centre for Genomic Pathogen Surveillance